miniworld.utils.util

Functions

cal_integrated_frame(R_chain, T_chain, ...)
center_and_realign_missing(xyz, mask_t)
centering_RT(R, T, mask)
cross_product_matrix(u)
donorHs(D, bonds, atoms)
draw_attn(attn, save_path)
draw_attn_multirow(attn, num_row, save_path)
draw_pae(logit_pae, mask, saving_path)
extract_tip_atom_xyz(query_sequence, xyz[, ...])
generate_initial_xyz(seq, chain_break[, ...])
generate_random_xyz(seq[, random_noise, ...])
generate_symmetric_operation([symmetry])
generate_symmetric_xyz(seq, chain_break[, ...])
get_Cb(xyz)
get_train_valid_data_dir_dictionary(...)	Describes the structure of the data directory dictionary.
make_frame(X, Y)
random_rot_trans(xyz[, random_noise])
rigid_from_3_points(N, Ca, C[, non_ideal, eps])
rigid_from_3_points_v2(N, Ca, C, mask_crds, ...)
th_ang_v(ab, bc[, eps])
th_dih(a, b, c, d)
th_dih_v(ab, bc, cd)
writepdb(filename, atoms, seq, Ls[, ...])