miniworld.utils.util.get_train_valid_data_dir_dictionary¶

miniworld.utils.util.get_train_valid_data_dir_dictionary(data_dir_dictionary)[source]¶

Describes the structure of the data directory dictionary:

data_dir_dictionary = {
'PDB_hhr_dir' : '/home/psk6950/practice/MiniWorld/data/hhr_rerefactoring/',
'pickle_data' : {
    'PDB_msa_dir' : '/home/psk6950/practice/MiniWorld/data/pickle_data/a3m/',
    'PDB_mmcif_dir' : '/home/psk6950/practice/MiniWorld/data/pickle_data/mmcif/'
},
'STRING_msa_dir' : '/home/psk6950/practice/MiniWorld/data/STRING/MSA',
'STRING_template_dir' : '/home/psk6950/practice/MiniWorld/data/STRING/Template',
'STRING_ID_Seq_path' : '/home/psk6950/practice/MiniWorld/data/STRING_ID_dict.txt',
'ID_to_source_dir' : '/home/psk6950/practice/MiniWorld/data/new/filter_final_v00/new_ID_to_source_dict.txt',
'PDB_Monomer_ID_to_info_dir' : '/home/psk6950/practice/MiniWorld/data/valid_PDB_Monomer_ID_list.txt',
'PDB_Complex_ID_to_info_dir' : '/home/psk6950/practice/MiniWorld/data/valid_PDB_Complex_ID_list.txt',
'PDB_ID_to_info_dir' : '/home/psk6950/practice/MiniWorld/data/new/filter_final_v00/list_PSK_v04.csv',
'PDB_ID_full_sequence' : '/home/psk6950/practice/MiniWorld/data/new/filter_final_v00/new_PDB_ID_full_sequence.txt',
'train_ID_list' : '/home/psk6950/practice/MiniWorld/data/train_ID_list.txt',
'valid_PDB_ID_list' : '/home/psk6950/practice/MiniWorld/data/valid_PDB_ID_list.txt',
'valid_STRING_ID_list' : '/home/psk6950/practice/MiniWorld/data/valid_STRING_ID_list.txt',

}