miniworld.feature.MiniWorld_featuring_species

Functions

MSA_block_deletion(msa, insertion[, nb])

Down-sample given MSA by randomly delete blocks of sequences Input: MSA/Insertion having shape (N, L) output: new MSA/Insertion with block deletion (N', L)

MSA_featurize_wo_statistics(msa, insertion, ...)

I modified RF2 version.

MSA_featurize_wo_statistics_by_chain(msa, ...)

I modified RF2 version.

center_and_realign_missing(xyz, mask_t)

chain_break_cropping(chain_break, crop_idx)

cluster_sum(data, assignment, N_seq, N_res)

cutoff_chain_num(sel, xyz, chain_break, ...)

display_top(snapshot[, key_type, limit])

find_chain_combinations(pairs)

generate_combinations(lst, pairs)

get_STRING_crop(len_s, mask, device, params)

get_complex_crop(len_s, mask, device, params)

get_crop(chain_start, chain_end, mask, ...)

get_same_crop_idx(xyz_full, crop_idx, ...[, ...])

get_spatial_crop(xyz, mask, pivot_chain_idx, ...)

getsize(obj_0)

Recursively iterate to sum size of object & members.

permute_label(protein_list, crop_idx, ...)

random_split(n, k, min_split)

template_featurize(input_template_dict, params)

I modified RF2 version.