Examples

• EGFR-antibody interaction analysis
  • Section 2: Finding binding pockets for EGFR KD using “BsiteP”
    • #Section 3: Conducting Protein-Ligand Complex Structure Prediction Using GDDL
• EGFR-ligand interaction analysis
  • Tips and Instructions
• EGFR-ligand interaction analysis
  • Section 2: Finding binding pockets for a given protein (EGFR) using “BsiteP”
    • ## Benchmarking results of binding site prediction method
    • #Section 3: Conducting Protein-ligand Docking Using GDDL
  • Section 4: Re-scoring GDDL docking results using BindingRMSD.
  • 4-1. Re-scoring for Docked Protein-Ligand Complex
  • 4-2. 3D Visualization: Crystal Structure vs Docked Poses
  • 4-3. Crystal Ligand Pose vs Docked Ligand Pose: RMSD and Prediction Comparison