deepfold.common.protein.ideal_atom_mask¶
- deepfold.common.protein.ideal_atom_mask(prot: Protein) ndarray[source]¶
Computes an ideal atom mask.
Protein.atom_mask typically is defined according to the atoms that are reported in the PDB. This function computes a mask according to heavy atoms that should be present in the given sequence of amino acids.
- Parameters:
prot – Protein whose fields are numpy.ndarray objects.
- Returns:
An ideal atom mask.