miniworld.utils.ProteinClass

Functions

PDB_parsing(PDB_file[, IS_LABEL, return_lddt])

Input : PDB file path, IS_LABEL (bool) Output : Protein object

Classes

Protein(sequence, structure[, occupancy, ...])
ProteinMSA([msa_ID, query_sequence, ...])	Represents the Multiple Sequence Alignment (MSA) of a Protein.
ProteinSequence(sequence[, masked_sequence, ...])	This class is used to store the protein sequence information.
ProteinStructure(xyz, chain_break, atom_mask)	This class is used to store the protein structure information.
ProteinTemplate(sequence, structure[, ...])	position : (M, L_template) np.array or list or tensor.
ProteinTemplates([templates, ...])	ProteinTemplates : list of ProteinTemplate