miniworld.utils.parser_util¶ Functions center_and_realign_missing(xyz, mask_t) cross_product_matrix(u) donorHs(D, bonds, atoms) get_Cb(xyz) make_frame(X, Y) random_rot_trans(xyz[, random_noise]) rigid_from_3_points(N, Ca, C[, non_ideal, eps]) th_ang_v(ab, bc[, eps]) th_dih(a, b, c, d) th_dih_v(ab, bc, cd) writepdb(filename, atoms, seq, Ls[, ...])