deepfold.data.search.parsers.parse_hmmsearch_a3m¶

deepfold.data.search.parsers.parse_hmmsearch_a3m(query_sequence: str, a3m_string: str, skip_first: bool = True) → Sequence[TemplateHit][source]¶

Parses an a3m string produced by hmmsearch.

Parameters:

query_sequence – The query sequence.
a3m_string – The a3m string produced by hmmsearch.
skip_first – Whether to skip the first sequence in the a3m string.

Returns:

A sequence of TemplateHit results.