deepfold.relax.amber_minimize.clean_protein¶

deepfold.relax.amber_minimize.clean_protein(prot: Protein, checks: bool = True)[source]¶

Adds missing atoms to Protein instance.

Parameters:

prot – A protein.Protein instance.
checks – A bool specifying whether to add additional checks to the cleaning process.

Returns:

A string of the cleaned protein.

Return type:

pdb_string