deepfold.common.protein.Protein¶

class deepfold.common.protein.Protein(atom_positions: ndarray, aatype: ndarray, atom_mask: ndarray, residue_index: ndarray, b_factors: ndarray, chain_index: ndarray | None = None, remark: str | None = None, parents: Sequence[str] | None = None, parents_chain_index: Sequence[int] | None = None)[source]¶

Protein structure representation.

__init__(atom_positions: ndarray, aatype: ndarray, atom_mask: ndarray, residue_index: ndarray, b_factors: ndarray, chain_index: ndarray | None = None, remark: str | None = None, parents: Sequence[str] | None = None, parents_chain_index: Sequence[int] | None = None) → None¶

Methods

__init__(atom_positions, aatype, atom_mask, ...)

Attributes

`chain_index`
`parents`
`parents_chain_index`
`remark`
`atom_positions`
`aatype`
`atom_mask`
`residue_index`
`b_factors`