promptbind.utils.generation_utilsΒΆ Functions binarize(x) compute_RMSD(a, b) distance_loss_function(epoch, y_pred, x, ...) distance_optimize_compound_coords(coords, ...) get_LAS_distance_constraint_mask(mol) get_info_pred_distance(coords, y_pred, ...) n_hops_adj(adj, n_hops) read_mol(sdf_fileName, mol2_fileName[, verbose]) write_with_new_coords(mol, new_coords, toFile)