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IITP PPI 0.0.2 documentation

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IITP PPI 0.0.2 documentation

API
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- API/Backbone
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  - deepfold
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    - deepfold.common
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      - deepfold.common.protein
      - deepfold.common.residue_constants
    - deepfold.config
    - deepfold.data
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      - deepfold.data.errors
      - deepfold.data.modules
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        deepfold.data.modules.dataloaders
        
        deepfold.data.modules.mmcif_dataset
        
        deepfold.data.modules.samplers
        
        deepfold.data.modules.single_dataset
      - deepfold.data.monomer
      - deepfold.data.multimer
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        deepfold.data.multimer.input_features
        
        deepfold.data.multimer.msa_pairing
      - deepfold.data.pdbio
      - deepfold.data.pdbx_parsing
      - deepfold.data.search
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        deepfold.data.search.crfalign
        
        deepfold.data.search.input_features
        
        deepfold.data.search.mmcif
        
        deepfold.data.search.msa_identifiers
        
        deepfold.data.search.parsers
        
        deepfold.data.search.templates
      - deepfold.data.tools
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        deepfold.data.tools.hhblits
        
        deepfold.data.tools.hhsearch
        
        deepfold.data.tools.hmmbuild
        
        deepfold.data.tools.hmmsearch
        
        deepfold.data.tools.jackhmmer
        
        deepfold.data.tools.kalign
        
        deepfold.data.tools.utils
    - deepfold.distributed
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      - deepfold.distributed.model_parallel
      - deepfold.distributed.utils
    - deepfold.eval
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    - deepfold.loss
    - deepfold.losses
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    - deepfold.modules
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    - deepfold.ops
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      - deepfold.ops.evoformer_attention
    - deepfold.package_info
    - deepfold.relax
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    - deepfold.runner
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    - deepfold.testing
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      - deepfold.testing.common
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    - deepfold.train
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    - deepfold.utils
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- API/Tool
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  - bis_protein_structure
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  - gd_dl
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    - gd_dl.data
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    - gd_dl.lib_pdb_mol2
    - gd_dl.models
    - gd_dl.path_setting
    - gd_dl.rerank_model
    - gd_dl.utils
  - promptbind
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    - promptbind.data
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      - promptbind.data.data
    - promptbind.models
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    - promptbind.test_promptbind
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    - promptbind.visualize_prompt_components
  - diffalign
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    - diffalign.models
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      - diffalign.models.common
      - diffalign.models.encoder
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        diffalign.models.encoder.edge
        
        diffalign.models.encoder.egnn
      - diffalign.models.epsnet
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        diffalign.models.epsnet.diffusion
    - diffalign.utils
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      - diffalign.utils.chem
      - diffalign.utils.common
      - diffalign.utils.dataloader
      - diffalign.utils.datasets
      - diffalign.utils.evaluation
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        diffalign.utils.evaluation.covmat
      - diffalign.utils.misc
      - diffalign.utils.transforms
      - diffalign.utils.visualize

deepfold.data.modules.dataloaders¶