bis_protein_structure.MMEVAL

Functions

convert_string(s)	Converts a string of alphabets into a corresponding string of numbers based on alphabet position.
eval_interface(native_pdb_path, pred_pdb_path)	Evaluates the similarity between the native and predicted interfaces based on contact maps.
get_ICS(native_contact_map, pred_contact_map)	Computes the Interface Similarity Score (ICS) between two contact maps.
get_IPS(native_contact_map, pred_contact_map)	Computes the Interface Patch Score (IPS) between two contact maps.
get_contact(pdb_path[, residue_dict, ...])	Calculates the contact map between residues in a PDB file.
readPDB(pdb_dir)	Reads a PDB file and returns the structure, chains, and residue dictionary.
restype_refer_atoms(restype)	Returns the list of atom indices for a given residue type.