deepfold.common.protein

Protein data type.

Functions

add_pdb_headers(prot, pdb_str)	Add pdb headers to an existing PDB string.
from_pdb_string(pdb_str[, chain_id])	Takes a PDB string and constructs a Protein object.
from_prediction(processed_features, result)	Assembles a protein from a prediction.
from_relaxation(relaxed_pdb_str[, ...])	Amber relaxation procedure renames residue index starting from 1.
get_pdb_headers(prot[, chain_id])
ideal_atom_mask(prot)	Computes an ideal atom mask.
to_modelcif(prot)	Converts a Protein instance to a ModelCIF string.
to_pdb(prots)	Convert Protein instances to a PDB string.

Classes

Protein(atom_positions, aatype, atom_mask, ...)

Protein structure representation.