deepfold.data.toolsΒΆ

Modules

hhblits

Library to run HHblits from Python.

hhsearch

Library to run HHsearch from Python.

hmmbuild

A Python wrapper for hmmbuild - construct HMM profiles from MSA.

hmmsearch

A Python wrapper for hmmsearch - search profile against a sequence db.

jackhmmer

Library to run Jackhmmer from Python.

kalign

A Python wrapper for Kalign.

utils

Common utilities for data pipeline tools.