deepfold.data.multimer.input_features

Functions

add_assembly_features(all_chain_features)	Add features to distinguish between chains.
convert_monomer_features(monomer_features)	Reshapes and modifies monomer features for multimer models.
create_all_seq_msa_features(all_seq_features)
create_all_seq_msa_features_from_a3m(a3m_strings)	Get MSA features for paring.
create_multimer_features(paired_a3m_strings)	Create multimer features from paired MSA strings.
crop_chains(chains_list, msa_crop_size, ...)	Crops the MSAs for a set of chains.
int_id_to_str_id(num)	Encodes a number as a string, using reverse spreadsheet style naming.
pad_msa(example, min_num_cluster)
pair_and_merge(all_chain_features)	Runs processing on features to augment, pair and merge.
process_final(np_example)	Final processing steps in data pipeline, after merging and pairing.
process_multimer_features(complex, ...[, ...])	Create a multimer input features.
process_single_chain(chain_features, ...[, ...])	Process a single chain features.
process_unmerged_features(all_chain_features)	Postprocessing stage for per-chain features before merging.

Classes

ComplexInfo(descriptions, num_units)