deepfold.config

DeepFold2 model configuration.

Classes

AlphaFoldConfig([is_multimer, ...])
AuxiliaryHeadsConfig([...])
CenterOfMassConfig([enabled, ...])
DistogramHeadConfig([c_z, num_bins])
DistogramLossConfig([weight, min_bin, ...])
EvoformerStackConfig([c_m, c_z, ...])
ExperimentallyResolvedHeadConfig([c_s, c_out])
ExperimentallyResolvedLossConfig([weight, ...])
ExtraMSAEmbedderConfig([emsa_dim, c_e])
ExtraMSAStackConfig([c_e, c_z, ...])
FAPELossConfig([weight, ...])
FeaturePipelineConfig(preset, is_multimer, ...)
InputEmbedderConfig([tf_dim, msa_dim, c_z, ...])
LossConfig([fape_loss_config, ...])
MaskedMSAHeadConfig([c_m, c_out])
MaskedMSALossConfig([weight, eps, num_classes])
PLDDTLossConfig([weight, cutoff, ...])
PerResidueLDDTCaPredictorConfig([c_s, ...])
RecyclingEmbedderConfig([c_m, c_z, min_bin, ...])
StructureModuleConfig([c_s, c_z, ...])
SupervisedChiLossConfig([weight, ...])
TMLossConfig([enabled, weight, ...])
TMScoreHeadConfig([c_z, num_bins, max_bin])
TemplateAngleEmbedderConfig([ta_dim, c_m])
TemplatePairEmbedderConfig([tp_dim, c_t, ...])
TemplatePairStackConfig([c_t, ...])
TemplatePointwiseAttentionConfig([c_t, c_z, ...])
TemplateProjectionConfig([c_t, c_z])
TrainingConfig([gradient_clipping, ...])
ViolationLossConfig([weight, ...])