deepfold.common.residue_constants

Constants used in AlphaFold.

Functions

aatype_to_str_sequence(aatype)	Return all residue types with X.
chi_angle_atom(atom_index)	Define chi-angle rigid groups via one-hot representations.
load_stereo_chemical_props()	Load stereo_chemical_props.txt into a nice structure.
make_atom14_dists_bounds([...])	compute upper and lower bounds for bonds to assess violations.
map_structure_with_atom_order(in_list[, ...])
sequence_to_onehot(sequence, mapping[, ...])	Maps the given sequence into a one-hot encoded matrix.

Classes

Bond(atom1_name, atom2_name, length, stddev)
BondAngle(atom1_name, atom2_name, atom3name, ...)